- rust pangenome snatcher takes a pangenome alignment and the reference genome and the query genome file and write the pangenome aligned files.
cargo build
λ gauravsablok rust-pangenome-snatcher → λ git main* → ./rust-pangenome-snatcher -h
Usage: rust-pangenome-snatcher <PAFALIGNMENT> <PAF_QUERY_FASTA> <PAF_REFERENCE_FASTA>
Arguments:
<PAFALIGNMENT> please provide the path to the alignment file
<PAF_QUERY_FASTA> please provide the path to the fasta file
<PAF_REFERENCE_FASTA> please provide the path to the reference file
Options:
-h, --help Print help
-V, --version Print version
- how to run the binary
./rust-pangenome-snatcher ./sample-files/pangenome.paf ./sample-files/pangenome_query.fasta ./sample-files/pangenome_ref.fasta
Gaurav Sablok