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@SystemsGenetics

SystemsGenetics

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  1. GEMmaker GEMmaker Public

    A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

    Nextflow 34 16

  2. FUNC-E FUNC-E Public

    FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID

    Python 5 3

  3. granny granny Public

    Python 4 2

Repositories

Showing 10 of 22 repositories
  • granny Public
    SystemsGenetics/granny’s past year of commit activity
    Python 4 GPL-3.0 2 19 0 Updated Dec 13, 2024
  • EnTAPnf Public

    Functional Annotation of Gene Lists

    SystemsGenetics/EnTAPnf’s past year of commit activity
    Nextflow 3 MIT 4 6 1 Updated Nov 25, 2024
  • GEMmaker Public

    A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

    SystemsGenetics/GEMmaker’s past year of commit activity
    Nextflow 34 MIT 16 11 1 Updated Nov 25, 2024
  • KINC Public

    Knowledge Independent Network Construction

    SystemsGenetics/KINC’s past year of commit activity
    C 11 MIT 4 25 0 Updated May 23, 2024
  • FUNC-E Public

    FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID

    SystemsGenetics/FUNC-E’s past year of commit activity
    Python 5 GPL-3.0 3 4 0 Updated Sep 26, 2023
  • configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    SystemsGenetics/configs’s past year of commit activity
    Nextflow 0 MIT 278 0 0 Updated May 4, 2022
  • pynome-nf Public

    Nextflow implementation of Pynome for retrieval and parallel indexing of public whole genomes.

    SystemsGenetics/pynome-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Apr 28, 2022
  • pynome Public

    Genome collection script for the SciDAS project.

    SystemsGenetics/pynome’s past year of commit activity
    Python 0 GPL-3.0 0 1 0 Updated Apr 28, 2022
  • KINC-nf Public

    Nextflow pipeline for KINC

    SystemsGenetics/KINC-nf’s past year of commit activity
    Nextflow 1 1 2 0 Updated Feb 14, 2022
  • kube-runner Public

    A tool for running bioinformatics workflows on a Kubernetes cluster

    SystemsGenetics/kube-runner’s past year of commit activity
    Shell 10 4 2 0 Updated Feb 2, 2022
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