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Commits on Feb 6, 2024

• Remove UCSC binaries, use conda packages.

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• Fix to pass sorted+marked BAMs to downstream QC.

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• Update qualimap version.

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• Specify Python version so we don"t get an incompatible graalvm version.

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• Bugfix to RNAsik wrapper script.

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• Update conda-build version for 1.5.6.

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• Update Python version (for MultiQC).

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• Use bedSort instead of system sort command.

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• Add support for specifying a checkpoint.

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• Remove secondary alignments before featureCounts.

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• Fix strand_guessing.py for pandas>1.2

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• Update sha256 in build recipe

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• Fix reported version number.

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• Add conda build recipe.

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• Use a shorter BDS task name for fastqc.

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• Don"t report biotypes by default.

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Commits on Nov 21, 2020

• update docs

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• update travis

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• Merge branch "master" of github.com:MonashBioinformaticsPlatform/RNAsik-pipe into master

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• updated docs with install info

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Commits on Nov 20, 2020

• added RNAsik citation file in BibTex format

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• version bump

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Commits on May 26, 2020

• reduces test mean score for strandness 0.9 -> 0.857 essentially saying if

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Commits on Oct 15, 2019

• more updates to docs

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• updated docs with installation instructions and contributions

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• changed quick install script it appears broken I"m guessing due to conda

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Commits on Oct 14, 2019

• fixed shebang to be python3 for all python scripts

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• updated docs, added release notes and dumped RNAsik version up

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• minor code refactoring

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Commits on Sep 4, 2019

• mostly cosmetic changes

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Commits on Feb 1, 2019

• fixed #42

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Commits on Jan 25, 2019

• This is a bit messy, but I didn"t track different copies of this repo

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• This is pretty important commit to fix #41 bug.

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Commits on Jan 18, 2019

• changed scaling factor down fixed #39

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• added more todos

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