destination: docs

url: http://momx.github.io/Momocs

template:

params:

bootswatch: cosmo

home:

strip_header: true

navbar:

type: default

right:

- icon: fa-github fa-lg

href: https://github.com/MomX/Momocs

authors:

Vincent Bonhomme:

href: http://www.vincentbonhomme.fr

reference:

- title: Morphometrics methods

contents:

- efourier

- rfourier

- tfourier

- sfourier

- dfourier

- opoly

- npoly

- fgProcrustes

- fgsProcrustes

- bezier

- title: More morphometrics methods

desc: Inverse functions and some others internally used by the main ones

contents:

- efourier_i

- rfourier_i

- tfourier_i

- sfourier_i

- dfourier_i

- opoly_i

- npoly_i

- bezier_i

- fProcrustes

- pProcrustes

- title: Calibration and other helpers for (open or not) outlines

desc: When defined

contents:

- calibrate_deviations

- calibrate_harmonicpower

- calibrate_reconstructions

- calibrate_r2

- harm_pow

- hcontrib

- coeff_rearrange

- coeff_sel

- coeff_split

- rm_asym

- symmetry

- calibrate_r2

- Ptolemy

- morphospace_positions

- title: Classes

desc: Their description and rationale

contents:

- Coo

- Out

- Opn

- Ldk

- Coe

- OutCoe

- OpnCoe

- LdkCoe

- TraCoe

- is

- title: Classes manipulation

desc: Largely inspired from dplyr's verbs

contents:

- arrange

- at_least

- chop

- combine

- dissolve

- filter

- mutate

- rescale

- select

- rm_harm

- rm_uncomplete

- rm_missing

- rw_fac

- sample_frac

- sample_n

- slice

- verify

- title: Import/Export

desc: Will be all moved to [Momit](http://www.github.com/MomX/Momit) soon

contents:

- export

- as_df

- import_Conte

- import_jpg

- import_jpg1

- import_StereoMorph_curve1

- import_tps

- import_txt

- tie_jpg_txt

- img_plot

- img_plot0

- lf_structure

- pix2chc

- title: Multivariate methods

desc: Will be in [Momecs](http://www.github.com/MomX/Momecs) at some point, and with KMEDOIDS, SVM, NNET and QDA

contents:

- PCA

- LDA

- MSHAPES

- MANOVA

- MANOVA_PW

- KMEANS

- KMEDOIDS

- MDS

- NMDS

- CLUST

- title: More on multivariate

desc: Will be in [Momecs](http://www.github.com/MomX/Momecs) at some point

contents:

- PCcontrib

- flip_PCaxes

- scree

- rePCA

- reLDA

- classification_metrics

- which_out

- title: Graphics

desc: Because who does not love graphics?

contents:

- panel

- mosaic

- pile

- stack.Coo

- inspect

- starts_with("plot_")

- starts_with("tps_")

- title: grindr Graphics

desc: (base) graphics is not dead!

contents:

- papers

- drawers

- layers

- title: Bridges

desc: Convert between different classes

contents:

- bridges

- title: Landmark helpers

contents:

- add_ldk

- starts_with("ldk_")

- starts_with("def_")

- starts_with("links")

- d

- measure

- coo_truss

- slidings_scheme

- rearrange_ldk

- title: Getters/Setters for components of interest

contents:

- starts_with("get")

- title: Data

desc: To play around with various data types

contents:

- apodemus

- bot

- chaff

- charring

- flower

- hearts

- molars

- mosquito

- mouse

- nsfishes

- oak

- olea

- shapes

- trilo

- wings

- title: Farming shapes

desc: Most of them will move to [Momfarm](http://www.github.com/MomX/Momfarm) soon

contents:

- ends_with("shape")

- breed

- perm

- title: Color palettes

desc: Qualitative, diverging and sequential, all those colorblind friendly from RColorBrewer, viridis and more.

contents:

- starts_with("pal_")

- title: Momocs helpers

desc: To access online website and help and different versions

contents:

- Momocs_website

- Momocs_help

- Momocs_currentCRANversion

- Momocs_currentGitHubversion

- Momocs_installlastversion

- Momocs_installedversion

- title: Misc

contents:

- andnow

- Momocs_version

- Momocs_help

- complex

- ed

- edm

- edm_nearest

- edi

- is_equallyspacedradii

- title: coo_ toolbox

desc: circa 100 helpers for 2D shapes and Coo objects

contents:

- starts_with("coo_")