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Issues list

Improve speed of basic search enhancement high priority killer feature
#23 opened Mar 30, 2015 by Martinsos
@Martinsos
4
Improve alignment speed enhancement high priority
#17 opened Jan 13, 2015 by Martinsos 1.0.0
@Martinsos
3
Process multiple cells in one iteration, add padding to database sequences, optimize for cache enhancement low priority
#3 opened Jun 13, 2014 by Martinsos
3
make command line parameters compatible to blast/swipe bug enhancement medium priority
#6 opened Jul 9, 2014 by tolot27
2
no member named 'abs' in namespace 'std';
#30 opened Aug 5, 2016 by FadelBerakdar
1
calculate hits for all query sequences of a multiple fasta file enhancement low priority
#9 opened Jul 29, 2014 by tolot27
1
Segmentation fault for certain gap open / gap extension configuration
#33 opened Jul 26, 2023 by michal-kierzynka
Add E-value
#31 opened Aug 16, 2016 by Martinsos
Add SHW mode
#29 opened Sep 17, 2015 by Martinsos
When gap open is smaller then gap extend, stuff breaks bug
#28 opened Sep 17, 2015 by Martinsos
Add flag for turning off overflow check enhancement
#27 opened Jun 29, 2015 by Martinsos 1.0.0
@Martinsos
Alignment of data for SSE/AVX does not seem to matter medium priority
#25 opened May 10, 2015 by Martinsos
@Martinsos
Create example of usage enhancement low priority
#21 opened Jan 15, 2015 by Martinsos
Update README! bug high priority
#20 opened Jan 15, 2015 by Martinsos
Split swimd.cpp into more files enhancement low priority
#19 opened Jan 13, 2015 by Martinsos
Limit memory usage of alignment enhancement high priority
#18 opened Jan 13, 2015 by Martinsos 1.0.0
@Martinsos
Consider using swimd to solve 1:1 for large targets enhancement killer feature low priority
#16 opened Jan 12, 2015 by Martinsos
Add callback function that is called after sequence is calculated enhancement low priority
#5 opened Jul 1, 2014 by Martinsos
Write better tests medium priority
#4 opened Jun 24, 2014 by Martinsos
ProTip! Updated in the last three days: updated:>2024-10-29.