MDAnalysis is a Python toolkit to analyse molecular dynamics files and trajectories in many popular formats. MDAnalysis can write most of these formats, too, together with atom selections for use in visualisation tools or other analysis programs. It provides a fast framework for complex analysis tasks, as well as flexible tooling to construct your own analyses.

This repository contains the user guide for MDAnalysis. The user guide originated as a project for Google Season of Docs 2019-2020.

The code in the user guide is released under the GNU LGPL v2.1 license, while text and images are released under the CC BY-SA 4.0 DEED license.