Wikipedia:WikiProject Molecular Biology/Computational Biology

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Welcome to the Computational Biology taskforce of WikiProject Molecular Biology.
If you have any questions about articles or are generally seeking advice, you're encouraged to ask at the talkpage of WikiProject Molecular Biology, the centralized point for discussion, thank you.

The Computational Biology taskforce is aimed at improving and organising articles on computational biology, bioinformatics, systems biology and related topics. More broadly, the taskforce aims to increase participation of computational biology researchers in English Wikipedia and other Wikimedia projects, as well as cultivate Wikipedia-related initiatives with academic publishers and learned societies.

Goals

The overall goal of the taskforce is to improve the article quality of Wikipedia articles within the scope. The taskforce will assist this goal by:

Identifying specific areas for improvement within existing articles
Identifying missing topics
Expand and improve entry pages, such as Computational biology
Provide a systematic structure of concepts within computational biology, using categories, templates and navigation-boxes.
Organising articles to provide up-to-date coverage of relevant topics
Potentially implement other quality control mechanisms (e.g. scientific peer review)

Scope

Topics of interest include:

"Classical" bioinformatics (i.e. sequence analysis, phylogenetics, genomics, proteomics, metabolomics, software tools and databases)
Simulation, modelling and analysis of biological systems (as in systems biology) of any scale (molecular structure, gene regulation, metabolism, protein interactions, cell physiology, cell populations, tissue organisation, organ modelling)
Computational neuroscience, computational immunology
Analysis and integration of biological concepts (e.g. in ontologies) and of biological data (e.g. microarray or imaging data)
Important algorithms or techniques widely used in the field (Next generation sequencing analyses, variant calling, etc.)
Biographies of notable computational biologists
Centers and institutions of global prominence in the field

Computational Biology articles by quality and importance
Quality	Importance
Quality	Top	High	Mid	Low	NA	???	Total
GA	1	2	4	5			12
B	9	30	31	51		2	123
C	9	42	63	126		7	247
Start	1	39	143	497		11	691
Stub		1	29	384		9	423
List		10	17	19			46
Category					32		32
Project					58		58
Redirect		1	9	27	18		55
Template					6		6
Other					3		3
Assessed	20	125	296	1,109	117	29	1,696
Unassessed		2				3	5
Total	20	127	296	1,109	117	32	1,701
WikiWork factors (?)		ω = 7,380			Ω = 4.93

Tasks

Below is a To-Do list of tasks for the taskforce, if you complete a task or have identified issues the taskforce can help with, you can edit the below template here.

Articles relating to this WikiProject need to be identified. Please add the WikiProject Computational Biology template to relevant articles.

Here are some tasks awaiting attention:

Article requests : Systems robustness
Cleanup : Systems Biology Ontology, Flux balance analysis
Expand : Structural bioinformatics
Stubs : BMC Systems Biology, Journal of Computational Biology, Saccharomyces Genome Database, MEGAN
Wikify : List of systems biology research groups
Other : Consolidate Bioinformatics, Computational biology and possibly other disciplines that are listed under computational biology. Currently Bioinformatics lumps in the two term as meaning the same, while Computational biology makes some distinction, which could be expanded and put in a more systematic way.

Participants

If you would like to join please add your signature by adding # ~~~~ to the bottom of this list.

BashfulSimian (talk) 01:43, 24 September 2013 (UTC)[reply]
Alexbateman (talk) 14:26, 3 February 2011 (UTC)[reply]
Allens (talk) 12:09, 17 October 2011 (UTC)[reply]
Andreas (talk) 16:14, 8 June 2011 (UTC)[reply]
Arboviral (talk) 10:00, 8 May 2014 (UTC)[reply]
Arh145 (talk) 07:57, 12 August 2011 (UTC)[reply]
BioGeek (talk) 08:29, 28 March 2012 (UTC)[reply]
Biosim (talk) 11:09, 19 February 2010 (UTC)[reply]
Briandurwood (talk) 10:30, 20 June 2011 (UTC)[reply]
Carbonrodney (talk) 09:32, 21 July 2008 (UTC)[reply]
Cdessimoz (talk) 21:23, 14 May 2012 (UTC)[reply]
Ceing (talk) 06:16, 17 July 2012 (UTC)[reply]
CuriousOliver (talk) 12:40, 14 December 2011 (UTC)[reply]
Cypherquest (talk) 19:55, 29 April 2014 (UTC)[reply]
Dubitzky (talk) 17:33, 29 November 2007 (UTC)[reply]
Duncan.Hull (talk) 20:36, 7 June 2011 (UTC)[reply]
Emw2012 (talk) 03:43, 30 June 2008 (UTC)[reply]
Estevezj (talk) 01:36, 21 November 2011 (UTC)[reply]
Firefly's luciferase (talk) 01:00, 29 November 2009 (UTC)[reply]
Guy Macon (talk) 19:35, 6 December 2011 (UTC)[reply]
Hendrik Fuß 11:43, 8 October 2007 (UTC)[reply]
My very best wishes (talk) 18:21, 4 March 2012 (UTC)[reply]
Benjamin Good (talk) 15:49, 17 July 2011 (UTC)[reply]
Ian Overton (talk) 04:09, 20 August 2012 (UTC)[reply]
J. Hengenius (talk) 15:55, 1 August 2008 (UTC)[reply]
benmoore 13:40, 8 June 2011 (UTC)[reply]
Jessemv (talk) 16:04, 22 September 2011 (UTC)[reply]
Jim Procter (talk) 08:37, 1st July 2007 (UST)
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Nicolas Le Novere (talk) 22:05, 13 June 2011 (UTC)[reply]
Luis M Rodriguez-R (talk) 15:51, 17 July 2011 (UTC)[reply]
Lpantano (talk) 09:34, 21 July 2011 (UTC)[reply]
Magnus Manske (talk) 18:07, 12 June 2011 (UTC)[reply]
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Mcorredor (talk) 19:09, 17 October 2011 (UTC)[reply]
PaoloRomano (talk) 19:43, 7 June 2011 (UTC)[reply]
Peccoud (talk) 14:35, 22 July 2011 (UTC)[reply]
Pete St.John (talk) 17:16, 13 December 2007 (UTC)[reply]
Plindenbaum (talk) 20:51, 7 June 2011 (UTC)[reply]
Paul (talk) 12:28, 30 November 2010 (UTC)[reply]
Spencer Bliven (talk) 03:47, 13 September 2011 (UTC)[reply]
HRanjeev (talk) 00:17, 21 June 2011 (UTC)[reply]
Rockpocket 17:38, 3 February 2011 (UTC)[reply]
Scray (talk) 04:00, 4 February 2009 (UTC)[reply]
Sitotorres (talk) 13:07, 16 August 2011 (UTC)[reply]
Skittleys (talk) 14:23, 24 August 2009 (UTC)[reply]
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Suchhie (talk) 14:20, 16 October 2011 (UTC)[reply]
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Thorwald (talk) 22:46, 18 June 2011 (UTC)[reply]
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Tomás Di Domenico (talk) 11:36, 13 August 2013 (UTC)[reply]
Traviswheeler (talk) 06:43, 7 March 2012 (UTC)[reply]
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Vangelis Simeonidis (talk) 15:55, 17 July 2011 (UTC)[reply]
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Khader Shameer (talk) 14:16, 17 July 2012 (UTC)[reply]
Daniel Mietchen - WiR/OS (talk) 02:38, 9 August 2012 (UTC)[reply]
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Torst (talk) 23:38, 8 September 2012 (UTC)[reply]
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DarTar (talk) 21:15, 27 October 2012 (UTC)[reply]
Imehedi (talk) 04:00, 24 February 2013 (UTC)[reply]
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biohisham (talk) 05:23, 10 September 2013 (UTC)[reply]
Parashar Dhapola (talk) 08:33, 18 September 2013 (UTC)[reply]
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Kolekar Pandurang (talk) 07:02, 2 October 2013 (UTC)[reply]
TiagoHenrique (talk) 08:49, 5 October 2013 (UTC)[reply]
Benno89 (talk) 16:33, 19 October 2013 (UTC)[reply]
Bioscintillator (talk) 19:03, 13 November 2013 (UTC)[reply]
RC Howe (talk) 01:20, 15 February 2014 (UTC)[reply]
Louis Maddox (talk) 23:53, 20 May 2014 (UTC)[reply]
Karroje (talk) 19:37, 12 July 2014 (UTC)[reply]
Cal.monast (talk) 19:38, 12 July 2014 (UTC)[reply]
Eminent Junkie (talk) 18:36, 16 July 2014 (UTC)[reply]
Yuwan.cq (talk) 11:08, 8 August 2014 (UTC)[reply]
Hdash (talk) 03:48, 9 August 2014 (UTC)[reply]
Wickr (talk) 10:21, 12 August 2014 (UTC)[reply]
FASSMAN (talk) 03:04, 26 August 2014 (UTC)[reply]
Alistairirvine (talk) 00:53, 25 August 2014 (UTC)[reply]
Kiwwa (talk) 20:49, 25 August 2014 (UTC)[reply]
Alicehoy (talk) 10:49, 11 September 2014 (UTC)[reply]
Cjpenaponton (talk) 06:30, 1 September 2014 (UTC)[reply]
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Peter Georgeson (talk) 13:02, 11 September 2014 (UTC)[reply]
Marinka Zitnik (talk) 10:01, 21 October 2014 (UTC)[reply]
DancingBal (talk) 15:43, 13 November 2014 (UTC)[reply]
Richard☺Decal (talk) 07:19, 5 January 2015 (UTC)[reply]
Jarslan (talk) 04:46, 27 January 2015 (UTC)[reply]
VIVEK RAI 17:06, 15 February 2015 (UTC)[reply]
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AlexanderJunge (talk) 18:51, 5 November 2015 (UTC)[reply]
NPalopoli (talk) 17:39, 13 November 2015 (UTC)[reply]
Lemon (talk) 18:33, 2 December 2015 (UTC)[reply]
Alexander Monzon (talk) 12:19, 3 December 2015 (UTC)[reply]
Facundo Orts (talk) 12:29, 3 December 2015 (UTC)[reply]
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Mariafreiberger (talk) 20:26, 3 December 2015 (UTC)[reply]
Nahuel Gonz (talk) 20:36, 3 December 2015 (UTC)[reply]
Marcia Hasenahuer (talk) 23:59, 3 December 2015 (UTC)[reply]
Scigenis (talk) 21:04, 15 December 2015 (UTC)[reply]
Elsaezquerro33 (talk) 18:40, 28 December 2016 (UTC)[reply]
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ArthFrown (talk) 13:52, 17 April 2016 (UTC)[reply]
Jmc200 (talk) 01:37, 12 July 2016 (UTC)[reply]
Kieran (talk) 19:27, 19 July 2016 (UTC)[reply]
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Maonao (talk) 21:13, 6 September 2016 (UTC)[reply]
Ck841312 (talk) 13:52, 20 October 2016 (UTC)[reply]
Stewart Little (talk) 14:12, 24 March 2017 (UTC)[reply]
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Cbouyio (talk) 06:59, 19 August 2017 (UTC)[reply]
PalashSethi (talk) 06:08, 30 December 2017 (UTC)[reply]
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Abigail Wood (talk) 12:29, 4 March 2018 (UTC)[reply]
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letbg (talk) 23:25, 19 March 2018 (UTC)[reply]
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ACMey (talk) 17:26, 22 March 2018 (UTC)[reply]
Farzana Rahman (talk) 17:26, 28 March 2018 (UTC)[reply]
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John Douglas Huff (talk) 15:06, 16 April 2018 (UTC)[reply]
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bm208613 (talk) 03:02, 17 April 2018 (UTC)[reply]
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SuperiorWalrus ^(talk)^(contribs) 04:09, 26 May 2018 (UTC)[reply]
–Ammarpad (talk) 11:46, 13 September 2018 (UTC)[reply]
cbouyio (talk) 09:43, 10 October 2018 (UTC)[reply]
JHCaufield - talk - 00:16, 20 November 2018 (UTC)[reply]
Salubrious Toxin (talk) 15:13, 14 July 2019 (UTC)[reply]
Rifat1 Kabir2 (talk) 09:20, 8 December 2019 (UTC)[reply]
TiagoLubiana (talk) 11:30, 10 December 2019 (UTC)[reply]
Blankepitaph (talk) 23:52, 11 October 2020 (UTC)[reply]
Toniher (talk) 18:40, 13 February 2021 (UTC)[reply]
Xtalline (talk) 05:52, 13 August 2021 (UTC)[reply]
1Spark21 (talk) 13:04, 14 August 2021 (UTC)[reply]
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AGIwithTheBraids (talk) 23:30, 22 August 2023 (UTC)[reply]
CambrianCrab (talk) 18:20, 22 May 2024 (UTC)[reply]
Aarón Mayo (talk) 20:15, 14 August 2024 (UTC)[reply]

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PLOS topic pages

The Computational Biology taskforce collaborates with the journal PLOS Computational Biology on the Topic Pages initiative.

If you're preparing a topic pages submission and need help or advice from a Wikipedian, reach out to an active member of WikiProject Molecular Biology.

ISCB article competition

Taskforce members organise an annual Wikipedia article competition in association with the International Society for Computational Biology (ISCB).

The competition, running since 2012, awards students and trainees for the best contributions to computational biology-related articles. Entry is open internationally, to students and trainees of any level. We particularly encourage lecturers or course organisers to use this competition as a class assignment.

The current status of the competition is:

Year	Notice	Entries	Status
10 (2020-21)	10	entries	Open now!

Queries specific to the competition can be addressed to Alastair Kilpatrick or asked on the WikiProject Molecular Biology talk page.

ISMB Editathons

There have been ongoing efforts to run editathons at ISMB and related conferences, to recruit bioinformatics experts to contribute to Wikipedia.

Year	Information
2017	ISMB-ECCB 2017 Editathon
2016	ISMB 2016 Editathon
2014	ISMB 2014 Tutorial/Editathon
2012	ECCB 2012 Tutorial/Editathon

Tools

Main tool page
Reflinks - Edits bare references - adds title/dates etc. to bare references.
Checklinks - Edit and repair external links.
Dab solver - Quickly resolve ambiguous links.
Peer reviewer - Provides hints and suggestion to improving articles.

Wikiproject Watchlist - WikiProject Computational Biology

Templates

Markup Result Notes

{{WikiProject Molecular Biology|COMPBIO=yes}}

Molecular Biology: COMPBIO B‑class High‑importance

	This article is within the scope of WikiProject Molecular Biology, a collaborative effort to improve the coverage of Molecular Biology on Wikipedia. If you would like to participate, please visit the project page, where you can join the discussion and see a list of open tasks.Molecular BiologyWikipedia:WikiProject Molecular BiologyTemplate:WikiProject Molecular BiologyMolecular Biology articles
B	This article has been rated as B-class on Wikipedia's content assessment scale.
High	This article has been rated as High-importance on the importance scale.
	This article is supported by the Computational Biology task force (assessed as High-importance).

Add this to article talk pages to tag them as within the scope of this taskforce

{{bioinformatics-stub}}

This bioinformatics-related article is a stub. You can help Wikipedia by expanding it.

Add this to the bottom of very short bioinformatics articles in need of expansion.

{{User WikiProject CompBio}}

This user is a member of WikiProject Computational Biology.

Add this to your userpage to identify yourself as a taskforce member!

Please accept this invite to join the Computational Biology WikiProject, an attempt to build a comprehensive and detailed guide to computational biology.
Simply click here and add your username to the list to accept! {{{Signature}}}

Invite other interested users to join this WikiProject taskforce on their talk page.