Manipulating Python Programs
An interesting display of evolution through neural networks and a genetic algorithm
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
Comparative Genomics Toolkit 3
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
Tiny Genetic Programming in Python.
Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche-psb/wgd.
A public python implementation of the DeepHyperNEAT system for evolving neural networks. Developed by Felix Sosa and Kenneth Stanley. See paper here: https://eplex.cs.ucf.edu/papers/sosa_ugrad_report18.pdf
Algorithm For Gene Order Reconstruction in Ancestors
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
Outplay the AI with your intelligence
Guided synteny alignment between duplicated genomes (within specified quota constraint)
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Supported highly optimized and flexible genetic algorithm package for python3.8
FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
Add a description, image, and links to the evolution topic page so that developers can more easily learn about it.
To associate your repository with the evolution topic, visit your repo's landing page and select "manage topics."