ChIP-Seq: technical considerations for obtaining high-quality data (Q34024936)

30 July 2017

title

ChIP-Seq: technical considerations for obtaining high-quality data (English)

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30 July 2017

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Gangqing Hu

2

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author name string

Benjamin L Kidder

series ordinal

1

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30 July 2017

Keji Zhao

series ordinal

3

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30 July 2017

language of work or name

English

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publication date

20 September 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

issue

10

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30 July 2017

page(s)

918-922

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ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541830

Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data

5 July 2018

1 reference

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Application of ChIP-Seq and related techniques to the study of immune function

5 July 2018

1 reference

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Systematic bias in high-throughput sequencing data and its correction by BEADS.

5 July 2018

1 reference

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ECHO: a reference-free short-read error correction algorithm

5 July 2018

1 reference

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DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541830

Base-calling for next-generation sequencing platforms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541830

Quake: quality-aware detection and correction of sequencing errors

5 July 2018

1 reference

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The uniqueome: a mappability resource for short-tag sequencing

5 July 2018

1 reference

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Maintaining cell identity through global control of genomic organization

5 July 2018

1 reference

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Genome-wide chromatin maps derived from limited numbers of hematopoietic progenitors

5 July 2018

1 reference

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A survey of sequence alignment algorithms for next-generation sequencing

5 July 2018

1 reference

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A signal-noise model for significance analysis of ChIP-seq with negative control

5 July 2018

1 reference

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Distinct factors control histone variant H3.3 localization at specific genomic regions

5 July 2018

1 reference

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Impact of chromatin structures on DNA processing for genomic analyses

5 July 2018

1 reference

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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

5 July 2018

1 reference

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Optimal use of tandem biotin and V5 tags in ChIP assays

5 July 2018

1 reference

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Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4 T cells

5 July 2018

1 reference

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A large genome center's improvements to the Illumina sequencing system

5 July 2018

1 reference

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Design and analysis of ChIP-seq experiments for DNA-binding proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541830

Model-based analysis of ChIP-Seq (MACS)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541830

An extended transcriptional network for pluripotency of embryonic stem cells

5 July 2018

1 reference

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DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541830

High-resolution profiling of histone methylations in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541830

Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541830

29 October 2018

Identifiers

DOI

10.1038/NI.2117

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Dimensions Publication ID

30 July 2017

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30 July 2017

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